Histopathology data for Trak2

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #4 Skin [MA:0000151]
HOM F #2 Ovary [MA:0000384]
HOM M #3 Salivary gland [MA:0000346]
HOM F #2 Knee joint [MA:0000471]
HOM M #4 Brain [MA:0000168]
HOM M #4 Small intestine [MA:0000337]
HOM F #1 Sciatic nerve [MA:0001172]
HOM M #4 Femur [MA:0001359]
HOM M #3 Tooth [MA:0000348]
HOM F #2 Lymph node [MA:0000139]
HOM F #1 Gall bladder [MA:0000356]
HOM F #2 Bone [MA:0001459]
HOM M #4 Seminal vesicle [MA:0000410]
HOM M #3 Femur [MA:0001359]
HOM F #2 Ear [MA:0000236]
HOM M #3 Brown adipose tissue [MA:0000057]
HOM M #4 Brown adipose tissue [MA:0000057]
HOM M #4 Tibia [MA:0001361]
HOM F #1 Thyroid
HOM F #2 Bone marrow [MA:0000134]
HOM F #2 Mammary gland [MA:0000145]
HOM F #1 Kidney [MA:0000368]
HOM M #3 Urinary bladder [MA:0000380]
HOM M #3 Tibia [MA:0001361]
HOM M #3 Small intestine [MA:0000337]
HOM M #3 Epididymis [MA:0000397]
HOM F #2 Trachea [MA:0000441]
HOM F #1 Eye [MA:0000261]
HOM M #4 Esophagus [MA:0000352]
HOM M #4 Bone [MA:0001459]
HOM F #2 Skeletal muscle [MA:0003148]
HOM M #3 Liver [MA:0000358]
HOM M #3 Skin [MA:0000151]
HOM M #4 Salivary gland [MA:0000346]
HOM M #3 Pancreas [MA:0000120]
HOM F #1 Trachea [MA:0000441]
HOM F #1 Bone marrow [MA:0000134]
HOM F #1 Spinal cord [MA:0000216]
HOM F #2 Thymus [MA:0000142]
HOM F #1 Tongue [MA:0000347]
HOM F #1 Lung [MA:0000415]
HOM M #3 Brain [MA:0000168]
HOM F #2 Gall bladder [MA:0000356]
HOM F #2 Thyroid
HOM F #1 Lymph node [MA:0000139]
HOM F #1 Trigeminal V ganglion [MA:0001080]
HOM M #3 Ear [MA:0000236]
HOM M #4 Stomach [MA:0000353]
HOM M #4 Heart [MA:0000072]
HOM M #4 Trigeminal V ganglion [MA:0001080]
HOM F #2 Adrenal gland [MA:0000116]
HOM F #2 Kidney [MA:0000368]
HOM F #2 Tibia [MA:0001361]
HOM M #3 Stomach [MA:0000353]
HOM F #2 Sternum [MA:0001331]
HOM M #4 Bone marrow [MA:0000134]
HOM F #2 Esophagus [MA:0000352]
HOM F #1 Nasal cavity [MA:0000284]
HOM M #4 Epididymis [MA:0000397]
HOM F #1 Esophagus [MA:0000352]
HOM F #1 Tibia [MA:0001361]
HOM F #1 Sternum [MA:0001331]
HOM M #4 Tooth [MA:0000348]
HOM F #1 Adrenal gland [MA:0000116]
HOM M #4 Eye [MA:0000261]
HOM F #2 Nasal cavity [MA:0000284]
HOM F #1 Heart [MA:0000072]
HOM F #1 Brain [MA:0000168]
HOM M #4 Testis [MA:0000411]
HOM M #4 Sciatic nerve [MA:0001172]
HOM F #1 Small intestine [MA:0000337]
HOM M #4 Gall bladder [MA:0000356]
HOM F #2 Spinal cord [MA:0000216]
HOM F #1 Skin [MA:0000151]
HOM F #1 Uterus [MA:0000389]
HOM F #2 Trigeminal V ganglion [MA:0001080]
HOM M #4 Thyroid
HOM F #2 Stomach [MA:0000353]
HOM M #4 Lung [MA:0000415]
HOM F #2 Heart [MA:0000072]
HOM M #3 Sciatic nerve [MA:0001172]
HOM M #3 Spleen [MA:0000141]
HOM M #4 Tongue [MA:0000347]
HOM F #1 Mammary gland [MA:0000145]
HOM M #3 Sternum [MA:0001331]
HOM M #3 Kidney [MA:0000368]
HOM M #4 Adrenal gland [MA:0000116]
HOM M #3 Lung [MA:0000415]
HOM M #4 Kidney [MA:0000368]
HOM M #4 Spleen [MA:0000141]
HOM M #3 Adrenal gland [MA:0000116]
HOM M #4 Large intestine [MA:0000333]
HOM M #3 Tongue [MA:0000347]
HOM F #1 Bone [MA:0001459]
HOM F #2 Eye [MA:0000261]
HOM F #1 Brown adipose tissue [MA:0000057]
HOM F #2 Urinary bladder [MA:0000380]
HOM F #1 Pancreas [MA:0000120]
HOM M #3 Large intestine [MA:0000333]
HOM M #3 Bone marrow [MA:0000134]
HOM F #2 Pancreas [MA:0000120]
HOM F #2 Liver [MA:0000358]
HOM M #4 Sternum [MA:0001331]
HOM F #2 Tongue [MA:0000347]
HOM F #1 Thymus [MA:0000142]
HOM F #2 Lung [MA:0000415]
HOM F #1 Tooth [MA:0000348]
HOM M #3 Testis [MA:0000411]
HOM M #3 Eye [MA:0000261]
HOM M #3 Gall bladder [MA:0000356]
HOM M #3 Skeletal muscle [MA:0003148]
HOM F #1 Knee joint [MA:0000471]
HOM M #4 Nasal cavity [MA:0000284]
HOM F #2 Tooth [MA:0000348]
HOM F #2 Femur [MA:0001359]
HOM F #1 Stomach [MA:0000353]
HOM M #4 Knee joint [MA:0000471]
HOM M #3 Thymus [MA:0000142]
HOM F #2 Skin [MA:0000151]
HOM M #4 Prostate gland [MA:0000404]
HOM F #1 Skeletal muscle [MA:0003148]
HOM M #3 Prostate gland [MA:0000404]
HOM M #3 Nasal cavity [MA:0000284]
HOM F #1 Ovary [MA:0000384]
HOM F #2 Brain [MA:0000168]
HOM F #2 Brown adipose tissue [MA:0000057]
HOM M #4 Ear [MA:0000236]
HOM M #4 Trachea [MA:0000441]
HOM F #1 Urinary bladder [MA:0000380]
HOM M #3 Knee joint [MA:0000471]
HOM F #2 Small intestine [MA:0000337]
HOM M #3 Lymph node [MA:0000139]
HOM M #3 Trigeminal V ganglion [MA:0001080]
HOM M #4 Spinal cord [MA:0000216]
HOM M #4 Lymph node [MA:0000139]
HOM M #3 Spinal cord [MA:0000216]
HOM M #3 Heart [MA:0000072]
HOM F #1 Liver [MA:0000358]
HOM F #2 Uterus [MA:0000389]
HOM F #2 Spleen [MA:0000141]
HOM F #2 Sciatic nerve [MA:0001172]
HOM M #3 Seminal vesicle [MA:0000410]
HOM M #3 Trachea [MA:0000441]
HOM M #3 Esophagus [MA:0000352]
HOM F #2 Large intestine [MA:0000333]
HOM M #4 Pancreas [MA:0000120]
HOM F #1 Salivary gland [MA:0000346]
HOM M #4 Urinary bladder [MA:0000380]
HOM F #1 Ear [MA:0000236]
HOM F #1 Spleen [MA:0000141]
HOM M #4 Liver [MA:0000358] 2 0 portal venous hypoperfusion or hypoplasia with arteriolar reduplication and biliary hyperplasia
HOM F #1 Large intestine [MA:0000333]
HOM M #3 Bone [MA:0001459]
HOM F #2 Salivary gland [MA:0000346]
HOM M #3 Thyroid
HOM M #4 Skeletal muscle [MA:0003148]
HOM F #1 Femur [MA:0001359]

Associated histopathology images

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