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IMPC Data Release 21.0 Notes

IMPC

  • Release: 21.0
  • Published: 7th May 2024

Statistical Package

Genome Assembly

Summary

  • Number of phenotyped genes: 8,901
  • Number of phenotyped mutant lines: 9,594
  • Number of phenotype calls: 106,561

Data access

  • Ftp interface: ftp
  • RESTful interfaces: APIs

Highlights

Data release 21.0

Release notes:

Represents a major data release.
This release includes

  • Approximately 3.4 million more data points.
  • An additional 2031 phenotype calls.
  • A revised embryo landing page.
  • Changes to the analysis of Late Adult eye morphology data to exclude all ‘no data’ categories.
  • Revised n-numbers required to make sex-specific calls in IMPC primary viability version 2 procedure, now requiring 28 pups of the sex included in the calculations.
  • Inclusion of legacy calorimetry data previously excluded due to date format issues.
  • Fixes to include categorical data for time series analysis.
  • Changes to the processing of embryo data to avoid assigning a p-value to data acquired by manual annotation.
  • Streamlining of the statistical analysis pipeline available as release v2.0.0.

Data Reports

Total Number of Lines and Specimens in DR 21.0

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
TCP 768 9,287 30,857
JAX 2,061 15,657 58,604
HMGU 530 7,193 10,501
CCP-IMG 342 3,643 6,253
MRC Harwell 846 7,521 20,685
MARC 233 1,858 3,588
KMPC 98 2,956 3,768
RBRC 113 2,163 2,616
ICS 239 2,619 3,882
WTSI 1,621 5,364 18,660
UC Davis 1,574 9,428 39,596
BCM 1,170 9,508 35,144

Experimental Data and Quality Checks

Data Type QC Passed Data Points
categorical 27,007,526
image record 794,481
time series 27,943,516
ontological 1,982,542
text 600,819
unidimensional 23,321,419

Distribution of Phenotype Annotations

Production Status

Overall

By Center

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More charts and status information are available from our mouse tracking service GenTaR.

Phenotype Associations

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Trends

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Previous Releases

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