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Previous IMPC Data Release 19.1 Notes

You are viewing a previous release. Click here for the latest release notes.

IMPC

  • Release: 19.1
  • Published: 6th July 2023

Statistical Package

Genome Assembly

Summary

  • Number of phenotyped genes: 8,483
  • Number of phenotyped mutant lines: 9,135
  • Number of phenotype calls: 102,926

Data access

  • Ftp interface: ftp
  • RESTful interfaces: APIs

Highlights

Data release 19.1

Release notes:

Represents a minor data release.
This release

  • Includes data for the retina (combined) parameters.
  • Adds missing data for Arhgef26 and Gjc2.
  • Resolves an issue assigning phenotypes based only on one sex.
  • Resolves an issue with histopath image captions.
  • Fixes production statuses for some genes.
  • Resolves issues showing some ES cell clones in the gene report order section.
  • Includes FASTA sequence data for Crispr lines.

Data Reports

Total Number of Lines and Specimens in DR 19.1

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
TCP 719 9,039 29,910
JAX 1,932 15,307 56,559
HMGU 504 6,516 9,773
CCP-IMG 293 3,097 5,438
MRC Harwell 846 7,522 20,686
MARC 233 1,858 3,588
KMPC 79 2,353 2,822
RBRC 113 2,163 2,588
ICS 239 2,619 3,882
WTSI 1,607 5,364 18,660
UC Davis 1,512 9,211 38,542
BCM 1,059 8,795 32,204

Experimental Data and Quality Checks

Data Type QC Passed Data Points
categorical 24,973,889
image record 756,754
time series 26,137,391
ontological 1,857,850
text 558,656
unidimensional 21,547,750

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Production Status

Overall

By Center

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More charts and status information are available from our mouse tracking service GenTaR.

Phenotype Associations

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Trends

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Previous Releases

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