IMPC Release Notes

IMPC
  • Release: 8.0
  • Published: 16 July 2018
Statistical Package
  • PhenStat
  • Version: 2.14.1
Genome Assembly
  • Mus musculus
  • Version: GRCm38
Summary
  • Number of phenotyped genes: 5,115
  • Number of phenotyped mutant lines: 5,505
  • Number of phenotype calls: 59,407

Data access

Highlights

Data release 8.0

Data release 8.0 represents a major data release. Changes include: Represents a major data release. This release includes
  • More than 500 additional genes
  • 3I phenotype calls imported directly from the 3I consortium analysis
  • Reduce duplicate phenotype calls. Fixed an issue where some phenotpye associations with baselines comprised of controls from multiple IMPC projects within a center were being analyzed once per project.
  • Resolve issue with incorrect metadata split calculations for some centers.

Data Reports

Lines and Specimens

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
JAX 1,060 7,473 30,791
TCP 483 6,475 21,697
HMGU 265 2,731 4,851
KMPC 32 591 658
MARC 235 1,878 3,776
MRC Harwell 512 5,349 13,254
RBRC 82 1,827 1,663
ICS 202 2,086 3,232
WTSI 1,311 4,512 21,051
BCM 475 1,995 15,640
UC Davis 848 2,919 20,110

Experimental Data and Quality Checks

Data Type QC passed QC failed issues
categorical 13,047,108 3,221 * 15,810 *
unidimensional 9,463,677 29,870 * 209,608 *
time series 12,844,228 2,471 * 11 *
text 160,354 11,176 * 48,130 *
image record 366,858 0 0

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Status

Overall

By Center

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More charts and status information are available from iMits.

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Trends




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Previous Releases