IMPC Release Notes

IMPC
  • Release: 9.1
  • Published: 7 November 2018
Statistical Package
  • PhenStat
  • Version: 2.14.1
Genome Assembly
  • Mus musculus
  • Version: GRCm38
Summary
  • Number of phenotyped genes: 5,570
  • Number of phenotyped mutant lines: 5,957
  • Number of phenotype calls: 57,797

Data access

Highlights

Data release 9.1

Data release 9.1 represents a major data release. Changes include: Represents a major data release. This release
  • includes ~ 500 additional genes
  • More 3I data imported
  • no longer processes embryo parameters that are marked as do not annotate in IMPReSS (specifically, 'Responsive to tactile stimuli' and 'Spontaneous movement')
  • removes spurious X-Rray ontology associations where the data were marked as unobservable

Note: Data release 9.0 has been intentionally and permanantly removed due to data irregularities

Data Reports

Lines and Specimens

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
JAX 1,148 7,958 33,234
TCP 529 6,821 23,766
HMGU 289 2,917 5,273
KMPC 37 739 827
MARC 232 1,877 3,776
MRC Harwell 562 5,704 14,734
RBRC 92 1,967 1,803
ICS 211 2,201 3,375
WTSI 1,328 4,563 21,297
BCM 521 4,219 15,699
UC Davis 1,008 3,762 23,220

Experimental Data and Quality Checks

Data Type QC passed QC failed issues
categorical 13,312,831 3,734 * 17,736 *
unidimensional 10,063,922 36,892 * 282,348 *
time series 12,236,102 2,570 * 11 *
text 180,098 11,124 * 45,653 *
image record 396,400 0 0

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Status

Overall

By Center

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More charts and status information are available from iMits.

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Trends




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Previous Releases