IMPC Data Release 11.0 Notes

IMPC

  • Release: 11.0
  • Published: 23-February-2020

Statistical Package

  • PhenStat
  • Version: 2.20.3

Genome Assembly

  • Mus musculus
  • Version: GRCm38

Summary

  • Number of phenotyped genes: 6,440
  • Number of phenotyped mutant lines: 6,900
  • Number of phenotype calls: 75,844

Data access

  • Ftp interface: ftp
  • RESTful interfaces: APIs

Highlights

Data release 11.0

Release notes: Represents a major data release. This release includes:
  • First release to include data from the late adult pipeline.
  • Nearly 60 million datapoints and 590 thousand images.
  • Inclusion of data from the Czech Centre for Phenogenomics group.
  • Change the method of associating background strain to a colony, required for alignment for some colonies to corresponding control group.

Data Reports

Total Number of Lines and Specimens in DR 11.0

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
JAX 1,231 9,257 34,736
TCP 604 7,506 25,501
HMGU 346 3,605 6,404
CCP-IMG 91 1,293 1,524
KMPC 49 1,295 1,758
MARC 232 1,877 3,776
MRC Harwell 679 6,780 16,321
RBRC 99 2,097 1,939
ICS 237 2,518 3,828
WTSI 1,432 4,981 17,542
BCM 654 5,549 19,282
UC Davis 1,246 5,003 25,202

Experimental Data and Quality Checks

Data Type QC passed QC failed issues
categorical 17,290,216 3,167 * 69,876 *
unidimensional 12,660,671 56,530 * 342,796 *
time series 15,043,961 2,660 * 17 *
text 239,514 10,921 * 122,064 *
image record 519,670 0 0

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Production Status

Overall

By Center

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More charts and status information are available from iMits.

Phenotype Associations

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Trends

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Previous Releases

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