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Previous IMPC Data Release 14.0 Notes

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IMPC

  • Release: 14.0
  • Published: 07 May 2021

Statistical Package

Genome Assembly

Summary

  • Number of phenotyped genes: 7,590
  • Number of phenotyped mutant lines: 8,221
  • Number of phenotype calls: 89,329

Data access

  • Ftp interface: ftp
  • RESTful interfaces: APIs

Highlights

Data release 14.0

Release notes:

Represents a major data release.

NOTE: Infertility phenotye calls are missing from IMPC Data Relase 14.0. Infertility data is available at https://ftp.ebi.ac.uk/pub/databases/impc/all-data-releases/release-14.0/results/missingFertilityPhenotypeCalls.csv.gz
This release
  • Updates the rule for associating a gene with a phenotype for embryo gross morphology procedures. The updated rule defines a phenotype when 2 or more homozygous (or 4 or more heterozygous) specimens are abnormal.
  • Additional body weight parameters have been included, so bodyweights associated to procedures will be more accurate. This will influence the statistical modelling since bodyweight is a covariate to the standard IMPC model. See the IMPC statistical analysis help documentation for more information.
  • Includes more than 30k new images

Data Reports

Total Number of Lines and Specimens in DR 14.0

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
TCP 682 8,234 27,515
JAX 1,790 12,871 49,702
HMGU 425 4,801 8,052
CCP-IMG 153 2,021 2,947
MRC Harwell 740 7,132 18,738
MARC 233 1,858 3,588
KMPC 55 1,440 1,943
RBRC 104 2,150 2,393
ICS 241 2,612 3,887
WTSI 1,616 5,364 18,718
UC Davis 1,426 7,849 34,324
BCM 757 6,373 21,974

Experimental Data and Quality Checks

Data Type QC Passed Data Points
categorical 21,255,224
image record 599,052
time series 20,057,483
ontological 1,340,729
text 449,449
unidimensional 16,650,398

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Production Status

Overall

By Center

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More charts and status information are available from our mouse tracking services iMits and GenTaR.

Phenotype Associations

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Trends

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Previous Releases

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