You are viewing a previous release. Click here for the latest release notes.
IMPC
- Release: 7.0
- Published: 26 March 2018
Statistical Package
- PhenStat
- Version: 2.14.0
Genome Assembly
- Mus musculus
- Version: GRCm38
Summary
- Number of phenotyped genes: 4,820
- Number of phenotyped mutant lines: 5,186
- Number of phenotype calls: 60,670
Data access
- Ftp site: ftp://ftp.ebi.ac.uk/pub/databases/impc/release-7.0
- RESTful interfaces: APIs
Highlights
Data release 7.0
Release notes:
Represents a major data release. Changes include:
- More than 7,000 new phenotypes
- More than 500 new genes
- Statistical analysis of EYE parameters no longer include categories 'no data left eye' and 'no data right eye'
- Viability data correction and new viability data
- Corrected metadata group calculation for several parameters
- Corrected extraneous zygosity phenotype association when data was available for multiple zygosities, but insufficient numbers were available for one of the datasets to perform statistical analysis
- Inclusion of derived parameter calculation for Heart weight normalised against body weight (IMPC_HWT_012_001)
Data Reports
Lines and Specimens
| Phenotyping Center | Mutant Lines | Baseline Mice | Mutant Mice |
|---|---|---|---|
| JAX | 1,028 | 6,994 | 29,299 |
| TCP | 471 | 6,345 | 20,873 |
| HMGU | 261 | 2,664 | 4,773 |
| KMPC | 30 | 549 | 628 |
| MARC | 235 | 1,879 | 3,776 |
| MRC Harwell | 502 | 5,179 | 12,953 |
| RBRC | 79 | 1,785 | 1,621 |
| ICS | 193 | 2,008 | 3,091 |
| WTSI | 1,088 | 3,504 | 17,552 |
| BCM | 467 | 1,607 | 13,943 |
| UC Davis | 832 | 2,891 | 19,715 |
Experimental Data and Quality Checks
| Data Type | QC passed | QC failed | issues |
|---|---|---|---|
| categorical | 12,225,255 | 3,221 * | 16,529 * |
| unidimensional | 9,099,910 | 28,370 * | 203,522 * |
| time series | 12,778,993 | 2,393 * | 11 * |
| text | 154,731 | 11,369 * | 39,733 * |
| image record | 358,288 | 0 | 0 |
* Excluded from statistical analysis.
Allele Types
| Mutation | Name | Mutant Lines |
|---|---|---|
| Targeted Mutation | a | 793 |
| Targeted Mutation | 1 | 1100 |
| Targeted Mutation | b | 2320 |
| Targeted Mutation | 2 | 5 |
| Targeted Mutation | c | 2 |
| Targeted Mutation | d | 3 |
| Targeted Mutation | e | 62 |
Mouse knockout programs: KOMP,IMPC,EUCOMM,NCOM,mirKO,IST12471H5
Distribution of Phenotype Annotations
Status
Overall
By Center
More charts and status information are available from iMits.
Phenotype Associations Overview
We provide a 'phenome' overview of statistically significant calls. By following the links below, you'll access the details of the phenotype calls for each center.
| Phenotyping Center | Significant MP Calls | Pipeline |
|---|---|---|
| JAX | Browse | IMPC_001 |
| JAX | Browse | JAX_001 |
| TCP | Browse | TCP_001 |
| HMGU | Browse | IMPC_001 |
| HMGU | Browse | HMGU_001 |
| KMPC | Browse | IMPC_001 |
| MARC | Browse | IMPC_001 |
| MRC Harwell | Browse | HRWL_001 |
| WTSI | Browse | MGP_001 |
| BCM | Browse | IMPC_001 |
| BCM | Browse | BCM_001 |
| UC Davis | Browse | UCD_001 |